Digital Pathology

The functions provided in this repo can be used to label images showing blurred areas.

These functions have been designed to highlight blurred areas on digitized melanoma biopsy slides. In that case, the blurring was due to a problem with the scanner's focus at the time of scanning.

The possible labels for each image are: “totally blurred”, “partially blurred”, “no blur”. For the “partially blurred” category, an approximation of the blurred area is provided.

A standalone web-application for collecting, organizing, sharing and viewing gigapixel images like digital pathology slides.

OpenHI [Open Histopathological Image] is an open source framework that support viewing and manipulation of histopathological images known as whole-slide images (WSI) for digital pathology. Documentation is available at https://bioai.gitlab.io/OpenHI/