neuroscience

Opticka is an experiment manager built on top of the Psychophysics toolbox (PTB) for MATLAB. It runs experimental tasks using flexible state machine logic and easily does dynamic methods-of-constants type experiments with full behavioural control. It uses a class system to create simple to use visual stimuli using experimenter friendly units. Opticka can use an Eyelink eyetracker, Plexon Omniplex neurophysiology data collection and general TTL control using either a cheap LabJack (ms precision) or DataPixx/Display++ (µs precision). It contains analysis routines linked to Fieldtrip for spike and LFP data easily parsed in terms of the experimental variables.

NeuroML-based neural simulator

Python package for parsing Plexon's PLX data files (neurophysiological recordings).

A DIY instruction set and rough to run an HEG off an Arduino Nano. It uses an IR and Red LED, an OPT101 sensor, and ADS1115, and an Arduino Nano V3. The HEG is basically a pulse oximeter for your cortex and allows for biofeedback and direct control.