Tags

Release 1.6.0

FEATS:
=====
- New samplesheet recognition : recognized both samples that comes from merged runs and samples that come from normal runs (illumina naming pattern)

HOTFIX:
======
- Samples that started with the same prefix were causing issues, fixed also for paired end reads

HOTFIX:
======
- Samples that started with the same prefix were causing issues

HOTFIX:
======
- Removed mention of fastqc in multiqc rule

FEATS:
=====
- Adding slackhooks for notification upon failure or success of the pipeline
- Changing the logs to be in the output folders instead of the pipeline folder
- Adding new test option to test with data on a fixed location on the cluster (cfg group only)
- Removed FastQC step as QC is already done on the data beforehand

FIXES:
=====
- Fixed sample recognition for ddata provided by UMCU (illumina standard naming)

features :
- Exporting multiqc report into m drive with option --export-qc

- Hotfixed the unpaired option which did not worked anymore

- feat : Adding mouse mm10 as a new reference to pick from
- feat: The references in the config file now point to the new structure of the "Reference" folder

Feature : Unpaired input option
Fix : No more dependence to gendiag, now the references are listed in the config.yaml file
Fix : Added more memory in case multiqc struggles

- Current state of tanuki