Tags

Minor update:
- Refreshing dependency versions
- removing `setup.py` now that we use `pyproject.toml`
- updating `setuptools-git-versioner` dependency to `>=2.0,<3`

New release with:
- fixing Pandas version conflict but upgrading to SQLAlchemy 2.0
- using Pooch for Zenodo file handling and caching
- many other small bug fixes

migrating to SQLAlchemy 2.0 (and solving conflicts with pandas 2.2)

A beta version for testing the new Pooch-based code for Zenodo file-handling.

Supporting python 3.9-3.12

releasing the Zenodo patch

patching Zenodo download code after their REST API update

downgrading periodictable dependency to 1.5 (for conda)

Release 0.5 includes:
- many behind the scenes updates to version dependencies and code standards
- new features such as pH sensitivity calculations
- support for python 3.9-3.11
- many more minor updates

- relaxing version dependencies for Pandas and Numpy, to allow installing cobrapy

- preparing for 0.5.0 release
- fixing bug in element table function
- updating development tool versions (tox, isort, black)

- fixing requirement to have 'Content-Length' in the HTTP header when downloading from zenodo

- reverting to old DB (same as all previous release versions).
- adding methods for calculating the pH sensitivity

Major improvements to how we handle zenodo.org communications

after further refactoring the Zenodo code

adding the default MD5 checksum to the library itself (to avoid unnecessary communication with Zenodo.org)

removing pyzenodo3 dependency (and using `requests` directly)