bioinformatics

Armadillo: fast C++ library for linear algebra (matrix maths) & scientific computing - https://arma.sourceforge.net

Proteinortho is a tool to detect orthologous genes within different species. (Download)

A Biopython based package that constructs and represent all nucleic acids in a PDB structure, with a special focus on base-pair representation.

AmpCheck investigates primer/probe - template matching and return amplicon related information.

https://dnarna.gitlab.io/ampcheck

A plugin for Qiime2 to trim oligonucleotides and reverse-complement reads

Genome partitioning utilities

Join On Integers

A Swiss Knife suite to manage pipeline environments

Fork of https://github.com/mgtools/MinPath

SISSI++ (Simulating Site Specific Interactions) is a tool to simulate the site specific interactions along a phylogenetic tree based on patterns in alignments (RNA, DNA, codons, aminoacids) considering thermodynamic data.

[mirror] BAM file annotation with mutations.

This is just a mirror. Head over to Codeberg.org for active development