bioinformatics
Projects with this topic
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A Biopython based package that constructs and represent all nucleic acids in a PDB structure, with a special focus on base-pair representation.
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OTP, One Touch Pipeline, Documentation at https://one-touch-pipeline.gitlab.io/otp/
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Common Workflow Language - computational workflows @ UNLOCK
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DAPCy is a Python implementation of the Discriminant Analysis of Principal Components (DAPC) method for population genetics.
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A bioinformatic pipeline for identifying giant viruses and Preplasmiviricota viruses in metagenomic data.
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SeqExtract searches annotated genomes for keywords and extract corresponding fasta records
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Armadillo: fast C++ library for linear algebra (matrix maths) & scientific computing - https://arma.sourceforge.net
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AmpCheck investigates primer/probe - template matching and return amplicon related information.
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DElite is a novel R package for DE analysis. With a single command line, DE returns the output of edgeR, limma, dearseq and DESeq2, both as individual results and as a combined output. DElite offers user-friendly functionality, accompanied by a detailed report, and allows advanced users to customize their analyses to a high degree.
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A plugin for Qiime2 to trim oligonucleotides and reverse-complement reads
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SonicParanoid is a stand-alone software tool for the identification of orthologous relationships among multiple species.
For details go to the wiki-page
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RepeatGrower identify repeating k-mers in a genome and grows them until their occurrences decline.
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Crawl any filesystem for genome data, providing one-click opening in IGV
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Unix toolkit for feature analysis of alternative splicing events. Includes basic functions for manipulating tables, extraction of exon and intron-related features, discriminate feature analysis, motif maps for RNA-binding proteins, and more.
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Trimming, alignment and variant identification tool. Made to help professional make a quick variant identification through an easy to follow user interface developed in R with the Shiny framework.
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