bioinformatics

Armadillo: fast C++ library for linear algebra (matrix maths) & scientific computing - https://arma.sourceforge.net

Proteinortho is a tool to detect orthologous genes within different species. (Download)

SonicParanoid is a stand-alone software tool for the identification of orthologous relationships among multiple species.

For details go to the wiki-page

Bioinformatics - Pairwise sequence alignment using hidden Markov model.

SISSI++ (Simulating Site Specific Interactions) is a tool to simulate the site specific interactions along a phylogenetic tree based on patterns in alignments (RNA, DNA, codons, aminoacids) considering thermodynamic data.

Calculating codon usage in a DNA sequence using OMP in C++.

[mirror] BAM file annotation with mutations.

This is just a mirror. Head over to Codeberg.org for active development

GapProber is a probabilistic method for filling up gaps in genome assemblies.

mirSVR-based tool to predict the effects of SNPs on miRNA:target interactions