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git: remove is_bare_repository_cfg global variable

John Cai requested to merge jc/remove_is_bare_global into master

The is_bare_repository_cfg global variable is used for storing a bare repository setting, either through the config, an env var, or the commandline.

Instead, add a member to the repository struct to keep track of the setting there.

Signed-off-by: John Cai johncai86@gmail.com

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