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Duplicate gitaly init variables in 'default' file

What does this MR do?

Fix dependent init script variables for gitaly in case /etc/default/gitlab contains a custom app_root.

Are there points in the code the reviewer needs to double check?

Why was this MR needed?

The init script could misbehave in situations where GitLab is installed, from source, in a directory other than /home/git/gitlab.

Screenshots (if relevant)

Does this MR meet the acceptance criteria?

What are the relevant issue numbers?

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/31858

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