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Fix git lfs not getting submodule objects

What does this MR do?

Why was this MR needed?

Are there points in the code the reviewer needs to double check?

Does this MR meet the acceptance criteria?

  • Documentation created/updated
  • Added tests for this feature/bug
  • In case of conflicts with master - branch was rebased

What are the relevant issue numbers?

Closes #4123 (closed)

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