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Remove "CI_COMMIT_REF" notations from CI docs

Problem to solve

Remove "$CI_COMMIT_REF" notations from CI docs, which was deprecated and removed on GitLab Runner 9.0.

Further details

We still have "$CI_COMMIT_REF" in docs and specs.

$ git grep 'CI_COMMIT_REF\b'  
doc/ci/variables/README.md:++ export CI_COMMIT_REF=dd648b2e48ce6518303b0bb580b2ee32fadaf045
doc/ci/variables/README.md:++ CI_COMMIT_REF=dd648b2e48ce6518303b0bb580b2ee32fadaf045
spec/lib/gitlab/ci/config/entry/rules/rule_spec.rb:      let(:config) { { if: '$CI_COMMIT_REF =~ /^(?!master).+/' } }

Proposal

Replace any of them with CI_COMMIT_SHA.

Other links/references