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Update structure.sql to match executed migrations from !116553

Krasimir Angelov requested to merge ka/structure-sql/restore-order-after-116553 into master

What does this MR do and why?

!116553 (merged) introduced a new column and an index for packages_npm_metadata_caches, but updates to structure.sql does not match what we do in teh migrations. This corrects the dump.

See !116553 (comment 1384368002) for full explanation.

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