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Add feature flag to ignore alternate directories when running GlobalFileSizeCheck

Gavin Hinfey requested to merge 438245-dont-ignore-alternate-directories into master

What does this MR do and why?

!127919 (merged) introduced using the quarantine folder to check for new blobs over the filesize limit.

In Error: failed to push some refs to ‘xxxxxx’ (#438245 - closed) pushes from large repositories timeout while running this check.

Locally I can avoid this problem by not using the quarantine folder. This MR introduces a feature flag to also check if this is the case on staging.

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Related to #438245 (closed)

Edited by Gavin Hinfey

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