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Prefer GraphQL instead of project_vulnerabilities REST API

Thiago Figueiró requested to merge doc/project-vulnerabilities-deprecation into master

What does this MR do and why?

As a preparation for &5118, direct users to use the GraphQL equivalent of the /projects/:id/vulnerabilities REST API.

This is consistent with the warning already in https://docs.gitlab.com/ee/api/vulnerabilities.html.

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