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Entire remote ruleset repository should not be used as ruleset

What does this MR do?

Instead of overriding the target dir of remote rulesets, respect it and instead always always prepend source dir to type = "file" passthroughs.

What are the relevant issue numbers?

Fix semgrep scans using a SAST_RULESET_GIT_REFE... (gitlab-org/gitlab#488390 - closed) • Jason Leasure • 17.5 • On track

Does this MR meet the acceptance criteria?

Edited by Lucas Charles

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