Tags

Release 2.5.1

Release 2.5.0

Release 2.4.1

Release 2.4.0

Release 2.3.1

Release 2.3.0

Release 2.2.0

Release 2.1.1

Release 2.1.0

Release 2.0.2

Release 2.0.1

Release 2.0.0

Release 1.7.0

Release 1.6.0

Release 1.5.0

FEATS:
=====
- New option --alignment to provide alignment with Hg38 while basecalling
- Add basecalling model and methylation model in the multiqc report file
- Changed the struture of outputs once more to fit better 

FIXES:
=====
- Provide bam files per sample for multiplexed experiments so researcher can get their methylation calls for each sample

FEATS:
=====

- Implemented dorado 0.5.0 as sole basecaller for both simplex and demultiplex mode
- Implemented choice of both basecalling speed and methylation model as new options
- Added slack hooks to notify in slack when failure or success of a pipeline
- Updated multiplex test dataset to fit newly generated data
- New cute bannner and cute logo !
- In multiqc report, alias are now used instead of barcodes number
- Removed old model and imported a few new ones from dorado 0.5.0

FIXES:
=====

- Added more graphs to the output with Martin's feedback

- Hotfix: typo in export config path

features : 
- NanoPlot rules to generate flowcell health graph and yield graph
- NanoLyse custom report which can be parsed by multiqc : creates an overview per sample of how much lambda DNA was found
- Multiqc report with nanoplot + nanolyse + basecaller version