bioinformatics

Automated drug repurposing workflow for rare diseases – using Flask, Monarch API, DGIdb API and XGboost.

Scripts for pathway enumeration and random flux sampling of metabolite exchanges in microbial models.

Master thesis - Deep learning-based pairwise alignment of protein sequences using transformer architecture.

Bioinformatics - Segmentation of biofilm images using OpenCV library.

Materials in this project correspond to the "Machine Learning for Bioinformatics" course Dr. Jacob Machado gave at UNC Charlotte during the Fall semester of 2022. See more details in the README.md file.

Migrated to https://github.com/fpozoc/trifid

ELofssonlab Sars-Cov-2 projects

Protein-Protein Docking Scoring function.

Lectures by Sven Rahmann in the form of Jupyter notebooks