computational biology

CoNI is a practical R package for the unsupervised integration of numerical omics datasets. The tool is based on partial correlations to identify putative confounding variables for a set of paired dependent variables. CoNI combines two omics datasets in an integrated, complex hypergraph-like network, represented as a weighted undirected graph, a bipartite graph, or a hypergraph structure. These network representations form a basis for multiple further analyses, such as identifying priority candidates of biological importance or comparing network structures dependent on different conditions.

SeqExtract searches annotated genomes for keywords and extract corresponding fasta records

AmpCheck investigates primer/probe - template matching and return amplicon related information.

https://dnarna.gitlab.io/ampcheck

RepeatGrower identify repeating k-mers in a genome and grows them until their occurrences decline.

Migrated to https://github.com/fpozoc/trifid

A computational model of non-photochemical quenching (NPQ) in diatoms. Part of a study testing the role and mechanism of K+ efflux antiporter 3 (KEA3) in photoprotection of diatoms.

Some Bioinformatics example about dna, genes and other.