genetics

Annotation service for ELLA.

Variant calling pipeline

Analysis tool for interpretation of genetic variants. See homepage and documentation.

Companion utility for ELLA to build gene panels with transcript information, phenotypes and inheritance modes.

Gene panels compatible with ELLA, made at the Department of Medical Genetics at Oslo University Hospital. Contains transcript information, phenotypes and inheritance modes.

Analysis of gene and allelic diversity in subdivided populations, as well as a tool for management in conservation programs.

Plynk is a Python wraper for the PLINK software plus some convenience tools to enable a seamless workflow of Plink in Python.

Estimation of inbreeding-purging genetic parameters in pedigreed populations

Study of the connections between DNA expression of Covid patients and the development of Acute Encephalopathy. Project carried out by the Neurology Department of UC San Francisco in collaboration with the Data Science department of UC Berkeley (2022).

Rpackage for Trumpet plots

Measure of Integrity of Submissions of Students (M.I.S.S) is a tribute to MOSS, but completely browser based.

https://jefferey-cave.gitlab.io/miss/

A software to detect purging and to estimate inbreeding-purging genetic parameters in pedigreed populations.

A piece of software that can simulate DNA inheritance between cousins and ancestors, enabling users to generate the distributions of shared DNA across generations and between complex cousin matches.

Program for changing allele codes in a matrix of genotypes of any ploidy