nextflow

Variant calling pipeline

A GA4GH compliant Workflow-Execution-Service (WES) for Nextflow and Snakemake.

Deployment code for WESkit based on Docker-Swarm.

IMPORTANT: (1) This is for development only, (2) is not maintained and will be archived to be replaced by the k8s/helm deployment.

Sequence quality control workflow implemented in Nextflow.

a demonstrator for mapping with rdf-diagrams based on the alloy-development process

tools for processing semantic data packaged as Nextflow modules

Nextflow pipeline for DamID analysis

A Nextflow pipeline for processing RNAseq reads on Google Life Sciences pipeline