genetics

Annotation service for ELLA.

Variant calling pipeline

Analysis tool for interpretation of genetic variants. See homepage and documentation.

Companion utility for ELLA to build gene panels with transcript information, phenotypes and inheritance modes.

Plynk is a Python wraper for the PLINK software plus some convenience tools to enable a seamless workflow of Plink in Python.

Study of the connections between DNA expression of Covid patients and the development of Acute Encephalopathy. Project carried out by the Neurology Department of UC San Francisco in collaboration with the Data Science department of UC Berkeley (2022).

A piece of software that can simulate DNA inheritance between cousins and ancestors, enabling users to generate the distributions of shared DNA across generations and between complex cousin matches.